Gene Regulatory Network

Last updated on Aug 29, 2022
Gene Regulatory Network of F. oxysporum.

In process.

GRN
Edgardo Galán Vásquez
Edgardo Galán Vásquez
Associate Researchers C

My research interests include Bioinformatic, System biology, Data mining in Biology.

Publications

Gene regulatory network inference and gene module regulating virulence in Fusarium oxysporum
In this work, we inferred the gene regulatory network (GRN) of the fungus Fusarium oxysporum by using the regulatory networks of …
Regnier Cano, Alexandre Rafael Lenz, Edgardo Galán Vásquez, Jorge Humberto Prado, Ernesto Pérez-Rueda
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Gene regulatory network inference and gene module regulating virulence in Fusarium oxysporum
Identifying genes devoted to the cell death process in the gene regulatory network of Ustilago maydis
Cell death is a process that can be divided into three morphological patterns: apoptosis, autophagy and necrosis. In fungi, cell death …
Cinthia V Soberanes-Gutiérrez, Ernesto Pérez-Rueda, José Ruiz-Herrera, Edgardo Galán Vásquez
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Identifying genes devoted to the cell death process in the gene regulatory network of Ustilago maydis
Gene regulatory networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 inferred by a computational biology approach
Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 are well-known cellulase fungal producers. However, few studies addressing …
Alexandre Rafael Lenz, Edgardo Galán Vásquez, Eduardo Balbinot, Fernanda Pessi De Abreu, Nikael Souza de Oliveira, LetíCia OsóRio Da Rosa, Scheila de Avila e Silva, Marli Camassola, Aldo José Pinheiro Dillon, Ernesto Pérez-Rueda
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Gene regulatory networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 inferred by a computational biology approach
Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data
Biological systems respond to environmental perturbations and to a large diversity of compounds through gene interactions, and these …
Edgardo Galán Vásquez, Ernesto Pérez-Rueda
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Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data
Consensus architecture of promoters and transcription units in Escherichia coli: design principles for synthetic biology
Genetic information in genomes is ordered, arranged in such a way that it constitutes a code, the so-called cis regulatory code. The …
Cynthia Rangel Chavez, Edgardo Galán Vásquez, Agustino Martínez-Antonio
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Consensus architecture of promoters and transcription units in Escherichia coli: design principles for synthetic biology
Transcription factors exhibit differential conservation in bacteria with reduced genomes
The description of transcriptional regulatory networks has been pivotal in the understanding of operating principles under which …
Edgardo Galán Vásquez, Ismael Sanchez-Osorio, Agustino Martínez-Antonio
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Transcription factors exhibit differential conservation in bacteria with reduced genomes
Regulatory switches for hierarchical use of carbon sources in E. coli
In this work we study the preferential use of carbon sources in the bacterium Escherichia coli. To that end we engineered …
Ruth S. Pérez-Alfaro, Moisés Santillán, Edgardo Galán Vásquez, Agustino Martínez-Antonio
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Structural comparison of biological networks based on dominant vertices
It is a current practice to organize biological data in a network structure where vertices represent biological components and arrows …
Beatriz Luna, Edgardo Galán Vásquez, Edgardo Ugalde, Agustino Martínez-Antonio
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Structural comparison of biological networks based on dominant vertices
The regulatory network of Pseudomonas aeruginosa
Pseudomonas aeruginosa is an important bacterial model due to its metabolic and pathogenic abilities, which allow it to interact and …
Edgardo Galán Vásquez, Beatriz Luna, Agustino Martínez-Antonio
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The regulatory network of Pseudomonas aeruginosa