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GRN
A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp
Entamoeba are amoeboid extracellular parasites that represent an important group of organisms for which the regulatory networks must be …
Edgardo Galán Vásquez
,
María del Consuelo Gómez-García
,
Ernesto Pérez-Rueda
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Gene regulatory network inference and gene module regulating virulence in Fusarium oxysporum
In this work, we inferred the gene regulatory network (GRN) of the fungus Fusarium oxysporum by using the regulatory networks of …
Regnier Cano
,
Alexandre Rafael Lenz
,
Edgardo Galán Vásquez
,
Jorge Humberto Prado
,
Ernesto Pérez-Rueda
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Identifying genes devoted to the cell death process in the gene regulatory network of Ustilago maydis
Cell death is a process that can be divided into three morphological patterns: apoptosis, autophagy and necrosis. In fungi, cell death …
Cinthia V Soberanes-Gutiérrez
,
Ernesto Pérez-Rueda
,
José Ruiz-Herrera
,
Edgardo Galán Vásquez
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Gene regulatory networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 inferred by a computational biology approach
Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 are well-known cellulase fungal producers. However, few studies addressing …
Alexandre Rafael Lenz
,
Edgardo Galán Vásquez
,
Eduardo Balbinot
,
Fernanda Pessi De Abreu
,
Nikael Souza de Oliveira
,
LetíCia OsóRio Da Rosa
,
Scheila de Avila e Silva
,
Marli Camassola
,
Aldo José Pinheiro Dillon
,
Ernesto Pérez-Rueda
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Gene Regulatory Network
Construction and analysis of GRNs using comparative genomics, text mining and machine learning algorithms.
Transcription factors exhibit differential conservation in bacteria with reduced genomes
The description of transcriptional regulatory networks has been pivotal in the understanding of operating principles under which …
Edgardo Galán Vásquez
,
Ismael Sanchez-Osorio
,
Agustino Martínez-Antonio
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Regulatory switches for hierarchical use of carbon sources in E. coli
In this work we study the preferential use of carbon sources in the bacterium Escherichia coli. To that end we engineered …
Ruth S. Pérez-Alfaro
,
Moisés Santillán
,
Edgardo Galán Vásquez
,
Agustino Martínez-Antonio
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Structural comparison of biological networks based on dominant vertices
It is a current practice to organize biological data in a network structure where vertices represent biological components and arrows …
Beatriz Luna
,
Edgardo Galán Vásquez
,
Edgardo Ugalde
,
Agustino Martínez-Antonio
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The regulatory network of Pseudomonas aeruginosa
Pseudomonas aeruginosa is an important bacterial model due to its metabolic and pathogenic abilities, which allow it to interact and …
Edgardo Galán Vásquez
,
Beatriz Luna
,
Agustino Martínez-Antonio
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